Tapis

19 Feb 2020

The Tapis Platform is an open source, science-as-a-service API platform for powering your digital lab. Tapis allows you to bring together your public, private, and shared high performance computing (HPC), high throughput computing (HTC), Cloud, and Big Data resources...

Apache CouchDB

07 Nov 2019

Apache CouchDB is open source database software that focuses on ease of use and having a scalable architecture. It has a document-oriented NoSQL database architecture and is implemented in the concurrency-oriented language Erlang; it uses JSON to store data,...

Liferay CE

31 Oct 2019

Liferay Portal is a free and open source enterprise portal software product. Distributed under the GNU Lesser General Public License, Liferay was declared "Best Open Source Portal" by InfoWorld in 2007. It is primarily used to power corporate intranets and extranets....

HUBzero

31 Oct 2019

HUBzero® is an open source software platform for building powerful websites that host analytical tools, publish data, share resources, collaborate and build communities in a single web-based ecosystem. Originally created by researchers at Purdue University in...

Jupyter Notebook

31 Oct 2019

The Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data...

Abaco

31 Oct 2019

Abaco is a web service and distributed system that combines the actor model of concurrent computation, Linux containers into a web services platform that provides functions-as-a-service. In Abaco, actor registered in the system is associated with a Docker image....

CILogon

31 Oct 2019

CILogon provides an integrated open source identity and access management platform for research collaborations, combining federated identity management (Shibboleth, InCommon) with collaborative organization management (COmanage). Federated identity management enables...

Elasticsearch

31 Oct 2019

Elasticsearch is a search engine based on Lucene. It provides a distributed, multitenant-capable full-text search engine with an HTTP web interface and schema-free JSON documents.

Open Science Chain (OSC)

16 Oct 2019

OSC, built using distributed ledger technologies (consortium blockchain), allows researchers to provide metadata and verification information about their scientific datasets and update this information as the datasets change and evolve over time in an auditable...

CyberGIS-Jupyter

16 Oct 2019

CyberGIS-Jupyter is an innovative cyberGIS framework for achieving data-intensive, reproducible, and scalable geospatial analytics using Jupyter Notebook. The framework adapts the Notebook with built-in cyberGIS capabilities to accelerate gateway application...

Petrel: A Programmatically Accessible Research Data Service

16 Oct 2019

Petrel is a pilot of data service for researchers that provides a simple and intuitive interface for self-managed project-based data sharing capability.The service provides storage on disks owned and managed by ALCF, and has a total capacity of 3 PB of usable ...

AMP Gateway for Atomic and Molecular Physics

16 Oct 2019

AMPGateway is an online portal that hosts a suite of codes being developed by the atomic and molecular physics community to study a variety of problems involving the time-independent and time-dependent Schrödinger equation. They include the calculation of cross...

Ike Wai Gateway

16 Oct 2019

The Ike Wai platform aims to provide centralized resources supporting multi-domain data management, computation, analysis and visualization tools to support reproducible science, modeling, data discovery and decision support for the Hawaii EPSCoR ‘Ike Wai research...

BIGNASim

11 Sep 2019

BIGNASim, a comprehensive platform including a database system and an analysis portal, aimed to be a general database for handling nucleic acids simulations.

GeoMapApp

11 Sep 2019

GeoMapApp is an earth science exploration and visualization application that is continually being expanded as part of the Marine Geoscience Data System (MGDS) at the Lamont-Doherty Earth Observatory of Columbia University. The application provides direct access to...

TerraWatchers

11 Sep 2019

TerraWatchers is dedicated to providing web-based, crowdsourced satellite image monitoring and overwatch tools for critical missions related to current events. We use interactive Google Maps© interfaces to display the latest freely available, high-resolution...

Allen Institute for Cell Science

11 Sep 2019

The Allen Cell Explorer is the data portal for the Allen Institute for Cell Science, where you can explore our publicly available data, tools and models. The portal provides an unprecedented view into the organizational diversity of human stem cells by combining...

PURR

11 Sep 2019

The Purdue University Research Repository (PURR) is a research collaboration and data management solution for Purdue researchers and their collaborators. PURR allows you to collaborate on research andThe Purdue University Research Repository (PURR) is a university...

Plant Genomics

11 Sep 2019

Plant genomics is a simple expansion of the scope of genomics at the National Center for Biotechnology Information (NCBI). NCBI provides the tools for storage of and analysis of nucleotide sequence such as, respectively, GenBank and BLAST and the capability to...

Chimaera portal

11 Sep 2019

Portal to South West Indian Ocean Fisheries data.

Old Weather

11 Sep 2019

Old Weather volunteers explore, mark, and transcribe historic ship's logs from the 19th and early 20th centuries. We need your help because this task is impossible for computers, due to diverse and idiosyncratic handwriting that only human beings can read and...

Cancer Therapeutics Response Portal (CTRP)

11 Sep 2019

The Cancer Therapeutics Response Portal (CTRP) links genetic, lineage, and other cellular features of cancer cell lines to small-molecule sensitivity with the goal of accelerating discovery of patient-matched cancer therapeutics.

dREG gateway

11 Sep 2019

The dREG gateway allows users to identify the location of promoters and enhancers using PRO-seq, GRO-seq, or ChRO-seq data. Our genomes encode not just protein-coding genes, but also the transcriptional regulatory elements (TREs) that encode the temporal and spatial...

Bioinformatics Links Directory

11 Sep 2019

The Bioinformatics Links Directory features curated links to molecular resources, tools and databases. The links listed in this directory are selected on the basis of recommendations from bioinformatics experts in the field. We also rely on input from our community...

NBCR - National Biomedical Computation Resource

11 Sep 2019

NBCR was founded in 1994 to facilitate interaction among biomedical scientists and promote the development of computing power at the national supercomputer centers. Since that time, NBCR has led the development of new technology in computing to benefit the biomedical...