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3DEM (3-D ELECTRON MICROSCOPY)
09 May 2024
A web-based research platform focused on developing and disseminating new technologies for enhanced resolution 3-dimensional electron microscopy.
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Amos Gateway
09 May 2024
The overarching goal of the project is create a comprehensive cyberinfrastructure for the atomic, molecular, and optical science (AMOS) community where practitioners can access a synergistic, full-scope platform for computational AMOS. The developers...
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Anecdata.org
09 May 2024
Anecdata.org is a free online citizen science platform developed by the Community Lab at the MDI Biological Laboratory in Bar Harbor, Maine.Anecdata.org is used by hundreds of individuals and organizations to gather and access citizen science...
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BamBam
09 May 2024 | Tools
BamBam is a package of tools for genome sequence analysis. BamBam contains tools that facilitate summarizing data from BAM alignment files and identifying features such as SNPs, indels, and haplotypes represented in those alignments. It aims to use parameters that...
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Benchmark Energy & Geometry Database (BEGDB)
09 May 2024 | Science Gateways
The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate QM calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.
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BIGNASim
09 May 2024 | Science Gateways
BIGNASim, a comprehensive platform including a database system and an analysis portal, aimed to be a general database for handling nucleic acids simulations.
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BioFragment Database (BFDb)
09 May 2024 | Science Gateways
The BioFragment Database (BFDb) is an open-data platform for computational chemistry analysis of noncovalent interactions and collects >3000 bifragment contacts directly from biological systems.
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BRENDA
09 May 2024 | Science Gateways
BRENDA is the main collection of enzyme functional data available to the scientific community.
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C++Explorer
09 May 2024 | Science Gateways
This repo builds a JupyterHub/Jupyter notebook server which offers an interactive C++ experience. The primary interface for this is through cling notebooks (cling is the C++ interpreter). We extend the cling notebook with certain magics, (namely %%writefile and...
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CatalzyeCare
09 May 2024 | Science Gateways
CatalyzeCare is a secure online community where healthcare providers and researchers can collaborate on and share ideas for transforming the healthcare delivery system.
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CAZY
09 May 2024 | Science Gateways
The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.
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Center for Academic Research and Training in Anthropogeny (CARTA)
09 May 2024 | Science Gateways
CARTA is a virtual organization formed in order to promote transdisciplinary research into human origins, drawing on methods from a number of traditional disciplines spanning the social, biomedical, biological, computational and engineering, physical and chemical...
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Chem Compute
09 May 2024 | Science Gateways
The Chem Compute website allows students to easily access state of the art computational software for free. Our hope is that this will enable faculty to incorporate computational chemistry into their undergraduate teaching and research curriculum without the hassle...
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CitSci.org
09 May 2024 | Science Gateways
We support your citizen science. At CitSci.org, you create your own projects where trained volunteers and scientists together answer local, regional, and global questions, inform natural resource decisions, advance scientific understanding, and improve environmental...
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CitSci.org
09 May 2024 | Science Gateways
We support your citizen science. At CitSci.org, you create your own projects where trained volunteers and scientists together answer local, regional, and global questions, inform natural resource decisions, advance scientific understanding, and improve environmental...
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COCALC
09 May 2024 | Science Gateways
CoCalc(Collaborative Calculation in the Cloud) is a sophisticated web service for online computation and provides the collaborative environment to share your files privately with project collaborators.
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Community Surface Dynamics Modeling System (CSDMS)
09 May 2024 | Science Gateways
CSDMS is an organization that promotes computational modeling of earth-surface processes by providing support for community, computing, and education. The Community Surface Dynamics Modeling System (CSDMS) deals with the Earth's surface - the ever-changing, dynamic...
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CottonGen
09 May 2024 | Science Gateways
CottonGen is a new cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure.
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Crops in silico
09 May 2024 | Science Gateways
Crops in silico is a global scientific collaboration that aims to harness the great strides in understanding of plant function from genes to whole plants, to accelerate forward approaches to crop breeding and bioengineering. The Crops in silico community is comprised...
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CyberGIS Gateway
09 May 2024 | Science Gateways
Geographic information is collected to support scientific investigations and decision-making in a wide variety of application domains (e.g., environment science, transportation, public health, and business). Enormous computational resources are needed to store and...
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DataCenterHub
09 May 2024 | Science Gateways
This hub allows for the organization, preservation, and sharing of scientific and engineering data.
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DataHub
09 May 2024 | Science Gateways
DataHub is a cross-domain platform for preserving, sharing, and discovering data produced by scientific research. Datasets are organized by experiments or cases, with a simple common structure for metadata, file collections, and data tables containing measurements...
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DataOne
09 May 2024 | Science Gateways
DataONE is a community driven project providing access to data across multiple member repositories, supporting enhanced search and discovery of Earth and environmental data. DataONE promotes best practices in data management through responsive educational resources...
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DesignSafe-CI
09 May 2024 | Science Gateways
DesignSafe-ci.org (DesignSafe) is the CI component of the NHERI collaboration. DesignSafe embraces a “cloud” strategy for the “big data” generated in natural hazards engineering research. It supports research workflows, data analysis and visualization, and the full...
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DipCheck
09 May 2024 | Science Gateways
DipCheck is a validation tool for the evaluation of protein backbone geometry, developed by Joana Pereira and Victor Lamzin at the EMBL Hamburg. The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of the geometry of a 5-atom dipeptide unit:...