MultiPLX

09 May 2024

About the program: MultiPLX 2.1 is a tool for analyzing PCR primer compatibility and automatically finding optimal multiplexing (grouping) solution. It uses state-of-the-art nearest neighbour DNA binding thermodynamics to estimate possible unwanted...

INCA: Monitoring Tool

09 May 2024

Determining whether a Grid is up in the face of complex Grid software deployments can be difficult and depends on the types of applications and users that utilize it. By detailing a set of software, services, and features that should be available on a Grid in a...

Pegasus

09 May 2024

The Pegasus project encompasses a set of technologies that help workflow-based applications execute in a number of different environments including desktops, campus clusters, grids, and clouds. Pegasus bridges the scientific domain and the execution environment by...

GeoNode

09 May 2024

GeoNode is a web-based application and platform for developing geospatial information systems (GIS) and for deploying spatial data infrastructures (SDI).

Neotoma Paleoecology Database

09 May 2024

Neotoma Paleoecology Database and Community is an online hub for data, research, education, and discussion about paleoenvironments. Anyone with an Internet connection can access Neotoma.

Paleobiology Database (PBDB)

09 May 2024

The Paleobiology Database is a public database of paleontological data that anyone can use, maintained by an international non-governmental group of paleontologists. You can explore the data online in the Navigator, which lets you filter fossil occurrences by time,...

HADDOCK (High Ambiguity Driven protein-protein DOCKing)

09 May 2024

HADDOCK (High Ambiguity Driven protein-protein DOCKing) is an information-driven flexible docking approach for the modeling of biomolecular complexes. HADDOCK distinguishes itself from ab-initio docking methods in the fact that it encodes information from identified...

ODM2(Observations Data Model 2)

09 May 2024

ODM2 is an information model and supporting software ecosystem for feature-based earth observations, designed to facilitate interoperability across scientific disciplines and domain cyberinfrastructures. For example, a single ODM2 database can readily integrate...

ODM2(Observations Data Model 2)

09 May 2024

ODM2 is an information model and supporting software ecosystem for feature-based earth observations, designed to facilitate interoperability across scientific disciplines and domain cyberinfrastructures. For example, a single ODM2 database can readily integrate...

Skyline

09 May 2024

Skyline is a freely-available, open-source Windows client application for building Selected Reaction Monitoring (SRM) / Multiple Reaction Monitoring (MRM), Parallel Reaction Monitoring (PRM), DIA/SWATH and targeted DDA quantitative methods and analyzing the resulting...

DSpace - open digital repository

09 May 2024

DSpace is the software of choice for academic, non-profit, and commercial organizations building open digital repositories. It preserves and enables easy and open access to all types of digital content including text, images, moving images, mpegs and data sets. ...

BOINC: Compute for Science

09 May 2024

BOINC lets you help cutting-edge science research using your computer (Windows, Mac, Linux) or Android device. BOINC downloads scientific computing jobs to your computer and runs them invisibly in the background. It's easy and safe. About 30 science projects use...

NCAR Digital Asset Services Hub (DASH)

09 May 2024

It is a centralized system for searching and discovering of digital scientific assets across NCAR and UCAR Community Programs, including datasets, publications, software, and models. The Data Management Plan is required for submitting or depositing your digital...

BioFragment Database (BFDb)

09 May 2024

The BioFragment Database (BFDb) is an open-data platform for computational chemistry analysis of noncovalent interactions and collects >3000 bifragment contacts directly from biological systems.

GenApp

09 May 2024

GenApp is a tool that can help people with existing code generate stand alone applications and science gateways. GenApp gateway generation is based upon definition files. User supplied code is brought into GenApp by writing a definition file and modifying or wrapping...

NDS Lab Workbench

09 May 2024

The Labs Workbench is: 1. An environment for development, integration, and experimentation with research data management and analysis tools and services in support of the NDS vision.. 2. A cloud-based computation and storage resource. 3. A scalable platform for...

Cyclus

09 May 2024

Cyclus is the next-generation agent-based nuclear fuel cycle simulator, providing flexibility to users and developers through a dynamic resource exchange solver and plug-in, user-developed agent framework. The goal of Cyclus is to enable a broad spectrum of fuel...

DipCheck

09 May 2024

DipCheck is a validation tool for the evaluation of protein backbone geometry, developed by Joana Pereira and Victor Lamzin at the EMBL Hamburg. The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of the geometry of a 5-atom dipeptide unit:...

xDCI Data CyberInfrastructure

09 May 2024 | Science Gateways

xDCI is an acronym for cross-disciplinary data cyberinfrastructure. xDCI is positioned as a completely customizable solution for scientific communities that simplifies the process of creating and using cyberinfrastructure to support data science.

ADCIRC

09 May 2024 | Science Gateways

ADCIRC is a system of computer programs for solving time dependent, free surface circulation and transport problems in two and three dimensions. These programs utilize the finite element method in space allowing the use of highly flexible, unstructured grids. Typical...

KnowEnG

09 May 2024 | Science Gateways

KnowEnG, The Knowledge Engine for Genomics, will transform the way biomedical researchers analyze their genome-wide data by integrating multiple analytical methods derived from the most advanced data mining and machine learning research. Embedded with the breadth of...

Amber

09 May 2024 | Science Gateways

Amber is a suite of biomolecular simulation programs. The term "Amber" refers to two things. First, it is a set of molecular mechanical force fields for the simulation of biomolecules (these force fields are in the public domain, and are used in a variety of...

Materials Data Facility (MDF)

09 May 2024 | Science Gateways

The Materials Data Facility (MDF) is set of data services built specifically to support materials science researchers. MDF consists of two synergistic services, data publication and data discovery (in development). The production-ready data publication service offers...

Clowder

09 May 2024 | Science Gateways

Clowder is a research data management system designed to support any data format and multiple research domains. The core software has been in development for the past five years with funding from a variety of sources. Clowder is open source software and we are always...

MDAnalysis

09 May 2024 | Science Gateways

MDAnalysis is an object-oriented python toolkit to analyze molecular dynamics trajectories generated by CHARMM, Gromacs, NAMD, LAMMPS, Amber or DL_POLY; it also reads other formats (e.g. PDB files and XYZ format trajectories; see the supported coordinate formats for...