SeaDataNet: Pan-European infrastructure for ocean & marine data management

09 May 2024

SeaDataNet is a distributed Marine Data Infrastructure for the management of large and diverse sets of data deriving from in situ of the seas and oceans.

Space Weather Data Portal

09 May 2024

An interactive, interdisciplinary portal for exploring time series data related to space weather (SWx) events. An accessible way for researchers, educators, and students to discover, display, and download historic space weather data.Find an event and then track its...

DisVis

09 May 2024

DisVis allows you to visualize and quantify the information content of distance restraints between macromolecular complexes. It performs a full and systematic 6 dimensional search of the three translational and rotational degrees of freedom to determine the number of...

TAPIS

09 May 2024 | Science Gateways

The Tapis Framework provides a hosted, unified web-based API for securely managing computational workloads across institutions so that experts can focus on their research instead of the technology needed to accomplish it. The advanced computing infrastructure landscape has evolved tremendously...

CS ROSETTA3

09 May 2024 | Science Gateways

CS ROSETTA is a protocol which generates 3D models of proteins, using only the 13CA, 13CB, 13C', 15N, 1HA and 1HN NMR chemical shifts as input. Based on these parameters, CS ROSETTA uses a SPARTA-based selection procedure to select a set of fragments from a...

3D-DART

09 May 2024 | Science Gateways

3D-DART server (3DNA-Driven DNA Analysis and Rebuilding Tool) provides an easy interface to a powerful collection of tools for the generation of DNA-structural models in custom conformations. The computational engine beyond the server makes use of the 3DNA software...

Genotype-Tissue Expression (GTEx)

09 May 2024 | Science Gateways

The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation. This project will collect and analyze multiple human tissues from...

EDISON for Everything for Computational Science & Engineering

09 May 2024 | Science Gateways

This science gateway in KISTI, South Korea, is for the bridge to computational science for education and advanced research.

Saver-X

09 May 2024 | Science Gateways

Although single-cell RNA sequencing technologies have shed light on the role of cellular diversity in human pathophysiology, the resulting data remains noisy and sparse, making reliable quantification of gene expression challenging. In SAVER-X, we use...

SMALTR Gateway

09 May 2024 | Science Gateways

SMALTR gateway is a Science Gateway for Structure-based MAchine Learning Tools for RNA (and other biomolecules) deployed with Apache Airavata ScIGaP gateway platform.The gateway uses machine learning to develop tools for multi-scale modeling of RNA structure. The...

Electronic Transponder Analysis Gateway (ETAG)

09 May 2024 | Science Gateways

The Electronic Transponder Analysis Gateway (ETAG) is a database and software system to provide professional data management and versatile data dissemination to the growing community of researchers who use Radio Frequency Identification (RFID)...

MIGA@XSEDE

09 May 2024 | Science Gateways

MiGA@XSEDE is the latest extension of the Microbial Genome Atlas (MiGA). MiGA is designed to be the genome-equivalent of projects like the Ribosomal Database Project (RDP) and SILVA. In addition to serving as a repository, MiGA provides data and tools to classify...

TopPIC Gateway

09 May 2024 | Science Gateways

TopPIC Suite gateway provides software for top-down mass spectrometry data analysis for public use. TopPIC Suite consists of four software tools for the interpretation of top-down mass spectrometry data: TopFD, TopPIC, TopMG, and ...

DELTA Topology Gateway

09 May 2024 | Science Gateways

The project “Descriptors of Energy Landscapes Using Topological Data Analysis (DELTA)” is an National Science Foundation (NSF) funded HDR Institute Frameworks that is advancing topological data analysis (TDA) and machine learning algorithms for the study of intensive...

Distant Reader Gateway

09 May 2024 | Science Gateways

The Distant Reader is a tool for reading.The Distant Reader empowers you to use & understand large amounts of textual information both quickly & easily. For example, the Distant Reader can consume the entire issue of a scholarly journal, the complete...

FutureWater

09 May 2024 | Science Gateways

As part of the Grand Challenges project Prepared for Environmental Change (PfEC), the research team has leveraged IU’s exceptional cyberinfrastructures and constructed computer-based models to answer the question: What does climate change mean for...

InterACTWEL

09 May 2024 | Science Gateways

InterACTWEL is an intelligent and secure decision support system to empower land, water, and energy managers and food producers to envision and plan towards a resilient future for their local watershed communitiesChange is inevitable. Communities, to be resilient,...

QUSP Gateway

09 May 2024 | Science Gateways

The QUSP science gateway for Quantum simulation tools developed and distributed by Colorado School of Mines department of Physics. The codes can be downloaded by anyone to compile and run on their own in HPC systems. To do so, individuals need a...

Search SRA

09 May 2024 | Science Gateways

Sequence Read Archive (SRA) data, available through multiple cloud providers and NCBI servers, is the largest publicly available repository of high throughput sequencing data. The archive accepts data from all branches of life as well as metagenomic and environmental...

NCI Community Hub

09 May 2024 | Science Gateways

The NCI Community Hub is a site for community research and collaboration in cancer research and informatics. Users can share resources, host online communities, and use collaboration tools . These resources are available to visitors ...

SeedMe

09 May 2024 | Science Gateways

Scientific data sharing made easy

ROTDIF-web

09 May 2024 | Science Gateways

ROTDIF-web :GenApp-based Science Gateway is for Biomolecular Nuclear Magnetic Resonance (NMR) Data Analysis and Structure Modeling.

DataAtRisk

09 May 2024 | Science Gateways

The Data Rescue Nomination Tool allows all users to request help in performing Earth science data rescue related tasks for any type of issue. The nomination tool team saw a need for such an applications because there was currently no known resource which would...

CoRIS Portal

09 May 2024 | Science Gateways

CoRIS is the Coral Reef Conservation Program's (CRCP) information portal that provides access to NOAA coral reef information and data products with emphasis on the U.S. states, territories and remote island areas. NOAA Coral Reef activities include coral reef...

Whole Tale

09 May 2024 | Science Gateways

Merging Science and Cyberinfrastructure PathwayWhole Tale is an NSF-funded Data Infrastructure Building Block (DIBBS) initiative to build a scalable, open source, web-based, multi-user platform for reproducible research enabling the creation,...